Will be fixed with the next big patch that the scarabeus wasn't removed from the inventory and I also fixed that the player received more gold then they should when only having 35 rhetoric instead of having 50 rhetoric or the seducer perk from the infiltrator skill tree.
I can't fix the lever / bag because I think this is a bug with the engine where the textures are not properly mirrored from the VRAM to the RAM and that's not fixable for us. At least, I think that's the cause, if it's caused by something else entirely, I am eager to know.