SureAI

I have been unable to use a bed for the last 2 hours of play time, and I even tried a mod to allow me to wait like in vanilla skyrim and it shows that I am not able to wait at this time. I am currently on the quest to wait for the dude to prepare some documents so it has become quite an annoyance and I am wondering if there is a reason for it.

It might be a mod conflict or you could be stuck in combat. What is the exact message when you try to use a bed? You may need to include a save file and list of mods for folks to check.

Without a mod to allow me to rest at all times there is no error message. When I try to interact with a bed its just completely unresponsive. I have also noticed the feat that lets me heal when I have a 2 hander equipped doesn't work at all, so looking back I wouldent be surprised if I were stuck in combat. Is there a way to force myself out of combat?

Normally if you try to sleep during combat you get the message "You cannot sleep while enemies are nearby", so it seems if he were stuck in combat he should be seeing that message when he tried to sleep. Unless that is glitched somehow.
-- there is no "waiting" in Enderal, so if you click T is just tells you that you have to search for a bed to rest,so I would guess that mod may not be compatible with Enderal.

What quest are you on -- Part of Something Momentous Part IV? If so, did you go to see Lishari in the Dancing Nomad?

I've occasionally had an odd bug where the E (interact) doesn't work on anything (it just suddenly stops working), and I have to exit the game and exit Steam, then start again to get it working. Maybe something like that?

Sometimes there is a problem with the Mod "Enable wait no heal". I think this is your Mod.
http://www.nexusmods.com/skyrim/mods/77670/?
The Mod is compatible. But not updated since December 2016 (the developer told me at Nexus he will do that after release of the Enderal DLC). So there might be problems after the last Enderal patches.

I have had the same problem. My solution:
- create a savegame with activated Mod
- close Enderal and deactivate the Mod
- start Enderal and load the savegame
- eventually you now should create a new savegame. After that load it. Or you have to change once your location.

You can activate the Mod later again.

The Mod also is deactivated at the following Quests (sorry I only know the german names):

Quest MQ09 "In der Höhle des Löwen"
Quest MQ11c "Ein Lied in der Stille".
Quest MQ12b "Unser aller Rettung, Teil II".
Quest MQ12c "Unser aller Rettung, Teil III".
Quest MQ14 "Für das höhere Gut" (Endgame)

The reason is there is a specific time of day the Quests needs or the time is slowed.